Detailed information of SNP:
|
SNP ID:
sf0718148334(Gbrowse)
Chromosome: chr07 Position: 18148334 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 58.99% | 41.01% |
| All Indica | 794 | 31.23% | 68.77% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 370 | 28.65% | 71.35% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718148334 | A->G | LOC_Os07g30670(LOC_Os07g30670.1) | Synonymous |
| sf0718148334 | A->G | LOC_Os07g30670(LOC_Os07g30670.3) | Synonymous |
| sf0718148334 | A->G | LOC_Os07g30670(LOC_Os07g30670.2) | Synonymous |