Detailed information of SNP:
|
SNP ID:
sf0718166367(Gbrowse)
Chromosome: chr07 Position: 18166367 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1298 | 98.84% | 1.16% |
| All Indica | 775 | 100.00% | 0.00% |
| All Japonica | 402 | 96.27% | 3.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 263 | 95.44% | 4.56% |
| Tropical Japonica | 86 | 98.84% | 1.16% |
| Japonica Intermediate | 53 | 96.23% | 3.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718166367 | T->C | INTERGENIC | None |