Detailed information of SNP:
|
SNP ID:
sf0718181730(Gbrowse)
Chromosome: chr07 Position: 18181730 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1265 | 95.49% | 4.51% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 358 | 86.31% | 13.69% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 243 | 96.30% | 3.70% |
| Tropical Japonica | 65 | 56.92% | 43.08% |
| Japonica Intermediate | 50 | 76.00% | 24.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718181730 | C->T | LOC_Os07g30720(LOC_Os07g30720.1) | INTRON |