Detailed information of SNP:
|
SNP ID:
sf0718327695(Gbrowse)
Chromosome: chr07 Position: 18327695 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 72.85% | 27.15% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 496 | 29.84% | 70.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 12.57% | 87.43% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718327695 | C->T | INTERGENIC | None |