Detailed information of SNP:
|
SNP ID:
sf0718375399(Gbrowse)
Chromosome: chr07 Position: 18375399 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 86.31% | 13.69% |
| All Indica | 790 | 98.23% | 1.77% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718375399 | G->A | INTERGENIC | None |