Detailed information of SNP:
|
SNP ID:
sf0718396743(Gbrowse)
Chromosome: chr07 Position: 18396743 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.06% | 11.94% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 495 | 66.87% | 33.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 56.59% | 43.41% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718396743 | T->C | LOC_Os07g31070(LOC_Os07g31070.1) | INTRON |