Detailed information of SNP:
|
SNP ID:
sf0718405653(Gbrowse)
Chromosome: chr07 Position: 18405653 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.96% | 14.04% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 62.42% | 37.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718405653 | A->G | LOC_Os07g31100(LOC_Os07g31100.1) | INTRON |