Detailed information of SNP:
|
SNP ID:
sf0718405696(Gbrowse)
Chromosome: chr07 Position: 18405696 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 80.57% | 19.43% |
| All Indica | 791 | 86.60% | 13.40% |
| All Japonica | 492 | 72.36% | 27.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 84.01% | 15.99% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 333 | 75.38% | 24.62% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718405696 | C->T | LOC_Os07g31100(LOC_Os07g31100.1) | INTRON |