Detailed information of SNP:
|
SNP ID:
sf0718470116(Gbrowse)
Chromosome: chr07 Position: 18470116 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 52.85% | 47.15% |
| All Indica | 794 | 28.97% | 71.03% |
| All Japonica | 489 | 95.09% | 4.91% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 374 | 23.26% | 76.74% |
| Indica II | 211 | 15.64% | 84.36% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718470116 | C->T | INTERGENIC | None |