Detailed information of SNP:
|
SNP ID:
sf0718540501(Gbrowse)
Chromosome: chr07 Position: 18540501 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 93.50% | 6.50% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 83.23% | 16.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718540501 | A->G | INTERGENIC | None |