Detailed information of SNP:
|
SNP ID:
sf0718567274(Gbrowse)
Chromosome: chr07 Position: 18567274 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 56.12% | 43.88% |
| All Indica | 749 | 84.91% | 15.09% |
| All Japonica | 440 | 4.55% | 95.45% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 351 | 85.47% | 14.53% |
| Indica II | 201 | 85.57% | 14.43% |
| Indica Intermediate | 197 | 83.25% | 16.75% |
| Temperate Japonica | 327 | 0.31% | 99.69% |
| Tropical Japonica | 64 | 23.44% | 76.56% |
| Japonica Intermediate | 49 | 8.16% | 91.84% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718567274 | A->G | INTERGENIC | None |