Detailed information of SNP:
|
SNP ID:
sf0718581891(Gbrowse)
Chromosome: chr07 Position: 18581891 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 70.99% | 29.01% |
| All Indica | 771 | 48.90% | 51.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 357 | 34.73% | 65.27% |
| Indica II | 206 | 50.97% | 49.03% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718581891 | T->C | INTERGENIC | None |