Detailed information of SNP:
|
SNP ID:
sf0718586101(Gbrowse)
Chromosome: chr07 Position: 18586101 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 54.48% | 45.52% |
| All Indica | 789 | 36.50% | 63.50% |
| All Japonica | 496 | 79.44% | 20.56% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 372 | 32.53% | 67.47% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 205 | 58.05% | 41.95% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718586101 | C->T | INTERGENIC | None |