Detailed information of SNP:
|
SNP ID:
sf0718619475(Gbrowse)
Chromosome: chr07 Position: 18619475 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 78.28% | 21.72% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 422 | 33.65% | 66.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 286 | 9.79% | 90.21% |
| Tropical Japonica | 79 | 89.87% | 10.13% |
| Japonica Intermediate | 57 | 75.44% | 24.56% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718619475 | A->C | INTERGENIC | None |