Detailed information of SNP:
|
SNP ID:
sf0718639992(Gbrowse)
Chromosome: chr07 Position: 18639992 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 82.81% | 17.19% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 451 | 49.22% | 50.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 297 | 27.95% | 72.05% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718639992 | C->T | INTERGENIC | None |