Detailed information of SNP:
|
SNP ID:
sf0718658068(Gbrowse)
Chromosome: chr07 Position: 18658068 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.88% | 13.12% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718658068 | C->A | LOC_Os07g31470(LOC_Os07g31470.1) | Synonymous |