Detailed information of SNP:
|
SNP ID:
sf0718660134(Gbrowse)
Chromosome: chr07 Position: 18660134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 84.04% | 15.96% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718660134 | T->C | INTERGENIC | None |