Detailed information of SNP:
|
SNP ID:
sf0718666532(Gbrowse)
Chromosome: chr07 Position: 18666532 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 51.07% | 48.93% |
| All Indica | 788 | 79.82% | 20.18% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 370 | 74.86% | 25.14% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718666532 | G->A | INTERGENIC | None |