Detailed information of SNP:
|
SNP ID:
sf0718792212(Gbrowse)
Chromosome: chr07 Position: 18792212 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 94.05% | 5.95% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 477 | 84.91% | 15.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 83 | 37.35% | 62.65% |
| Japonica Intermediate | 60 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718792212 | T->C | INTERGENIC | None |