Detailed information of SNP:
|
SNP ID:
sf0718799619(Gbrowse)
Chromosome: chr07 Position: 18799619 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 65.56% | 34.44% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 491 | 18.74% | 81.26% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 64 | 29.69% | 70.31% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718799619 | C->G | INTERGENIC | None |