Detailed information of SNP:
|
SNP ID:
sf0718815103(Gbrowse)
Chromosome: chr07 Position: 18815103 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 72.14% | 27.86% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 493 | 22.72% | 77.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 4.50% | 95.50% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718815103 | G->A | LOC_Os07g31690(LOC_Os07g31690.1) | INTRON |