Detailed information of SNP:
|
SNP ID:
sf0718837397(Gbrowse)
Chromosome: chr07 Position: 18837397 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 67.54% | 32.46% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718837397 | C->T | INTERGENIC | None |