Detailed information of SNP:
|
SNP ID:
sf0718839113(Gbrowse)
Chromosome: chr07 Position: 18839113 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.01% | 29.99% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718839113 | G->A | INTERGENIC | None |