Detailed information of SNP:



SNP ID: sf0718858890(Gbrowse)

Chromosome: chr07

Position: 18858890
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 66.43% 33.57%
All Indica798 99.00% 1.00%
All Japonica497 21.33% 78.67%
Aus67 14.93% 85.07%
Indica I374 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica94 73.40% 26.60%
Japonica Intermediate68 36.76% 63.24%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0718858890 T->C INTERGENIC None