Detailed information of SNP:
|
SNP ID:
sf0718861786(Gbrowse)
Chromosome: chr07 Position: 18861786 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.14% | 27.86% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718861786 | A->T | INTERGENIC | None |