Detailed information of SNP:
|
SNP ID:
sf0718870785(Gbrowse)
Chromosome: chr07 Position: 18870785 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.99% | 32.01% |
| All Indica | 797 | 56.09% | 43.91% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 373 | 72.92% | 27.08% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718870785 | A->G | INTERGENIC | None |