Detailed information of SNP:
|
SNP ID:
sf0718871020(Gbrowse)
Chromosome: chr07 Position: 18871020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 75.42% | 24.58% |
| All Indica | 796 | 62.81% | 37.19% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 31 | 38.71% | 61.29% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 4 | 25.00% | 75.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718871020 | C->T | INTERGENIC | None |