Detailed information of SNP:
|
SNP ID:
sf0718885569(Gbrowse)
Chromosome: chr07 Position: 18885569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.66% | 29.34% |
| All Indica | 798 | 63.91% | 36.09% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 77.60% | 22.40% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718885569 | C->T | INTERGENIC | None |