Detailed information of SNP:
|
SNP ID:
sf0718887586(Gbrowse)
Chromosome: chr07 Position: 18887586 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.17% | 42.83% |
| All Indica | 797 | 84.44% | 15.56% |
| All Japonica | 495 | 21.21% | 78.79% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718887586 | G->A | INTERGENIC | None |