Detailed information of SNP:
|
SNP ID:
sf0718909927(Gbrowse)
Chromosome: chr07 Position: 18909927 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 72.42% | 27.58% |
| All Indica | 776 | 52.19% | 47.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 357 | 36.13% | 63.87% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718909927 | C->T | INTERGENIC | None |