Detailed information of SNP:
|
SNP ID:
sf0718913488(Gbrowse)
Chromosome: chr07 Position: 18913488 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 86.88% | 13.12% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 77.82% | 22.18% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718913488 | A->T | LOC_Os07g31830(LOC_Os07g31830.1) | Non-Synonymous SNP |