Detailed information of SNP:
|
SNP ID:
sf0718923195(Gbrowse)
Chromosome: chr07 Position: 18923195 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.49% | 46.51% |
| All Indica | 797 | 43.29% | 56.71% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 23.53% | 76.47% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718923195 | G->A | INTERGENIC | None |