Detailed information of SNP:
|
SNP ID:
sf0718923729(Gbrowse)
Chromosome: chr07 Position: 18923729 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.11% | 44.89% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718923729 | A->G | LOC_Os07g31850(LOC_Os07g31850.1) | INTRON |