Detailed information of SNP:
|
SNP ID:
sf0718950057(Gbrowse)
Chromosome: chr07 Position: 18950057 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 798 | 83.96% | 16.04% |
| All Japonica | 497 | 78.67% | 21.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718950057 | G->A | LOC_Os07g31870(LOC_Os07g31870.1) | INTRON |