Detailed information of SNP:
|
SNP ID:
sf0718950900(Gbrowse)
Chromosome: chr07 Position: 18950900 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 57.91% | 42.09% |
| All Indica | 733 | 79.67% | 20.33% |
| All Japonica | 494 | 19.84% | 80.16% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 344 | 85.47% | 14.53% |
| Indica II | 197 | 90.86% | 9.14% |
| Indica Intermediate | 192 | 57.81% | 42.19% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718950900 | C->T | LOC_Os07g31870(LOC_Os07g31870.1) | INTRON |