Detailed information of SNP:



SNP ID: sf0718950900(Gbrowse)

Chromosome: chr07

Position: 18950900
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1347 57.91% 42.09%
All Indica733 79.67% 20.33%
All Japonica494 19.84% 80.16%
Aus66 86.36% 13.64%
Indica I344 85.47% 14.53%
Indica II197 90.86% 9.14%
Indica Intermediate192 57.81% 42.19%
Temperate Japonica334 3.29% 96.71%
Tropical Japonica94 69.15% 30.85%
Japonica Intermediate66 33.33% 66.67%
Group VI/Aromatic14 92.86% 7.14%
Intermediate40 70.00% 30.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0718950900 C->T LOC_Os07g31870(LOC_Os07g31870.1) INTRON