Detailed information of SNP:
|
SNP ID:
sf0718954691(Gbrowse)
Chromosome: chr07 Position: 18954691 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.45% | 39.55% |
| All Indica | 796 | 54.77% | 45.23% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 72.12% | 27.88% |
| Indica II | 212 | 27.83% | 72.17% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718954691 | T->C | INTERGENIC | None |