Detailed information of SNP:
|
SNP ID:
sf0718958087(Gbrowse)
Chromosome: chr07 Position: 18958087 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 68.25% | 31.75% |
| All Indica | 795 | 59.75% | 40.25% |
| All Japonica | 494 | 78.54% | 21.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 210 | 26.19% | 73.81% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718958087 | C->T | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |