Detailed information of SNP:
|
SNP ID:
sf0718959453(Gbrowse)
Chromosome: chr07 Position: 18959453 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.96% | 32.04% |
| All Indica | 798 | 59.27% | 40.73% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718959453 | T->G | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |