Detailed information of SNP:
|
SNP ID:
sf0718959807(Gbrowse)
Chromosome: chr07 Position: 18959807 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 76.48% | 23.52% |
| All Indica | 797 | 59.97% | 40.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 77.21% | 22.79% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718959807 | A->G | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |