Detailed information of SNP:
|
SNP ID:
sf0718959895(Gbrowse)
Chromosome: chr07 Position: 18959895 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.89% | 32.11% |
| All Indica | 797 | 59.35% | 40.65% |
| All Japonica | 497 | 78.67% | 21.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 76.94% | 23.06% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718959895 | G->T | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |