Detailed information of SNP:
|
SNP ID:
sf0718960887(Gbrowse)
Chromosome: chr07 Position: 18960887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 68.20% | 31.80% |
| All Indica | 796 | 59.67% | 40.33% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 76.88% | 23.12% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718960887 | C->T | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |