Detailed information of SNP:
|
SNP ID:
sf0718960972(Gbrowse)
Chromosome: chr07 Position: 18960972 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.89% | 32.11% |
| All Indica | 797 | 59.22% | 40.78% |
| All Japonica | 497 | 78.67% | 21.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 76.94% | 23.06% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718960972 | G->A | LOC_Os07g31884(LOC_Os07g31884.1) | INTRON |