Detailed information of SNP:
|
SNP ID:
sf0718970193(Gbrowse)
Chromosome: chr07 Position: 18970193 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 78.77% | 21.23% |
| All Indica | 781 | 64.02% | 35.98% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 81.87% | 18.13% |
| Indica II | 207 | 32.37% | 67.63% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718970193 | T->C | LOC_Os07g31900(LOC_Os07g31900.1) | Non-Synonymous SNP |