Detailed information of SNP:
|
SNP ID:
sf0718975525(Gbrowse)
Chromosome: chr07 Position: 18975525 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 70.07% | 29.93% |
| All Indica | 750 | 88.53% | 11.47% |
| All Japonica | 489 | 36.20% | 63.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 348 | 87.36% | 12.64% |
| Indica II | 207 | 88.89% | 11.11% |
| Indica Intermediate | 195 | 90.26% | 9.74% |
| Temperate Japonica | 334 | 26.05% | 73.95% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 65 | 41.54% | 58.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718975525 | A->C | LOC_Os07g31910(LOC_Os07g31910.1) | Non-Synonymous SNP |