Detailed information of SNP:
|
SNP ID:
sf0718982074(Gbrowse)
Chromosome: chr07 Position: 18982074 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 51.44% | 48.56% |
| All Indica | 701 | 76.75% | 23.25% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 314 | 81.53% | 18.47% |
| Indica II | 194 | 86.08% | 13.92% |
| Indica Intermediate | 193 | 59.59% | 40.41% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718982074 | C->T | INTERGENIC | None |