Detailed information of SNP:
|
SNP ID:
sf0718984299(Gbrowse)
Chromosome: chr07 Position: 18984299 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.31% | 33.69% |
| All Indica | 796 | 45.10% | 54.90% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 27.81% | 72.19% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718984299 | T->C | INTERGENIC | None |