Detailed information of SNP:
|
SNP ID:
sf0718988684(Gbrowse)
Chromosome: chr07 Position: 18988684 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 51.27% | 48.73% |
| All Indica | 762 | 88.58% | 11.42% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 179 | 79.33% | 20.67% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718988684 | G->A | INTERGENIC | None |