Detailed information of SNP:
|
SNP ID:
sf0718992428(Gbrowse)
Chromosome: chr07 Position: 18992428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 87.87% | 12.13% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718992428 | C->T | INTERGENIC | None |