Detailed information of SNP:
|
SNP ID:
sf0718992505(Gbrowse)
Chromosome: chr07 Position: 18992505 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.06% | 4.94% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718992505 | G->T | INTERGENIC | None |