Detailed information of SNP:
|
SNP ID:
sf0718993182(Gbrowse)
Chromosome: chr07 Position: 18993182 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 62.75% | 37.25% |
| All Indica | 776 | 86.47% | 13.53% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 363 | 92.01% | 7.99% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 202 | 68.32% | 31.68% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718993182 | A->G | INTERGENIC | None |